Resources: Consensus sequences for U.S. H5N1 clade 2.3.4.4b
submited by kickingbird at Apr, 23, 2024 16:27 PM from Andersen Laboratory at Scripps Research
BioProject: PRJNA1102327
Consensus genomes for 8 segments were generated with EPI_ISL_19032063 (source: GISAID) as a reference using iVar v1.4.2. Minimum depth was set at 1, minimum quality at 20, and the consensus threshold at 50%.
The consensus genomes are in ./fasta/.
The metadata from SRA is in ./metadata/.
Alignments of individual segments are in ./alignments/.
See Also:
Latest news in those days:
Consensus genomes for 8 segments were generated with EPI_ISL_19032063 (source: GISAID) as a reference using iVar v1.4.2. Minimum depth was set at 1, minimum quality at 20, and the consensus threshold at 50%.
The consensus genomes are in ./fasta/.
The metadata from SRA is in ./metadata/.
Alignments of individual segments are in ./alignments/.
- USCDC: Avian Influenza A(H5N1) U.S. Situation Update and CDC Activities 6 days ago
- USCDC: Urgent field correction notice 6 days ago
- Joint FAO/WHO/WOAH preliminary assessment of recent influenza A(H5N1) viruses 7 days ago
- Primers and probes for H5 and N1 qRT-PCR detection [CNIC] 8 days ago
- USDA: Actions to Protect Livestock Health From Highly Pathogenic H5N1 Avian Influenza 9 days ago
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