Resources: Consensus sequences for U.S. H5N1 clade 2.3.4.4b

BioProject: PRJNA1102327

Consensus genomes for 8 segments were generated with EPI_ISL_19032063 (source: GISAID) as a reference using iVar v1.4.2. Minimum depth was set at 1, minimum quality at 20, and the consensus threshold at 50%.

The consensus genomes are in ./fasta/.

The metadata from SRA is in ./metadata/.

Alignments of individual segments are in ./alignments/.