Badr C, Arbi M, Souiai O, Larbi I, Nsiri J, Elbehi. Tracing the 2021 equine influenza Outbreak: First characterization and phylogeographic analysis of H3N8 Florida clade 1 virus in Tunisia. Virology. 2025 Aug 12;611:110655
Equine influenza (EI) is a highly contagious viral respiratory disease affecting equids, with the potential of causing widespread outbreaks across Europe, the Americas, Asia, and other regions of the world. In Tunisia, in the spring of 2021, an EI virus outbreak occurred in a farm housing purebred Arabian horses that exhibited respiratory signs. This outbreak led to a national lockdown on horse movements and the cancellation of equestrian events. A total of 432 serum samples, collected from 2018 to 2021, were tested using ELISA competition assay. In addition, 100 Nasal swabs were collected during the 2021 outbreak and tested for the presence of EI via qRT-PCR. Five of these samples underwent full sequencing targeting hemagglutinin (HA) and neuraminidase (NA) genes. Phylogenetic and phylogeographic analyses were carried out on HA and NA gene sequences using Bayesian methods. Out of 432 serum samples, 80 tested positive, leading to an overall seroprevalence of 18.51 %, with the highest values recorded in 2018 and 2021. Complete sequences of the HA and NA genes identified the subtype as H3N8, belonging to the American lineage, Florida clade 1. Tunisian strains exhibited close genetic relationships with those from Algeria, the USA, France, Saudi Arabia, and the UK. Phylogeographic analysis reveals probable origin of the virus in Tunisia from the USA and France in 2017-2018. Our study highlights the critical need for continuous surveillance and molecular characterization of EI strains, particularly given their high transmissibility and potential for global dissemination.
See Also:
Latest articles in those days:
- [preprint]Emergence and antigenic characterisation of influenza A(H3N2) viruses with hemagglutinin substitutions N158K and K189R during the 2024/25 influenza season 16 hours ago
- Epitope specificity shapes the CD4+ T cell response to influenza virus infection in mice 16 hours ago
- Vaccination against H5 HP avian influenza virus leads to persistent immune response in wild king penguins 1 days ago
- Molecular Epidemiology and Genetic Diversity of Influenza B Viruses Based on Whole-Genome Analysis in Japan and Myanmar, 2016-2020 1 days ago
- Assessing HPAI-H5 transmission risk across wild bird migratory flyways in the United States 1 days ago
[Go Top] [Close Window]


